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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs1930961 1 rs9624836 chr22:25846087 CRYBB2 chr22:25615612-25627836:+ 1.09 7.04 2.94E-10 Bipolar disorder with mood-incongruent psychosis
THYM cis rs1577917 1 rs9647603 chr6:86639341 SNHG5 chr6:86386726-86388451:- -0.57 -7.62 1.9E-11 Response to antipsychotic treatment
THYM cis rs9309473 1 rs9653557 chr2:73795962 ALMS1P chr2:73872046-73912692:+ 0.59 4.53 1.69E-5 Metabolite levels
THYM cis rs9665626 1 rs9665626 chr10:104300638 SFXN2 chr10:104474298-104498946:+ 0.55 4.27 4.61E-5 Schizophrenia
THYM cis rs9894429 1 rs9674872 chr17:79581931 TSPAN10 chr17:79609349-79615778:+ 0.63 6.68 1.61E-9 Eye color traits
THYM cis rs3091242 1 rs9689 chr1:25688276 RHCE chr1:25688741-25756683:- 0.44 5.23 1.01E-6 Erythrocyte sedimentation rate
THYM cis rs7849270 1 rs9697030 chr9:131920181 CRAT chr9:131857075-131873070:- 0.42 4.98 2.82E-6 Blood metabolite ratios
THYM cis rs9894429 1 rs9747349 chr17:79584297 TSPAN10 chr17:79609349-79615778:+ 0.63 6.68 1.61E-9 Eye color traits
THYM cis rs9894429 1 rs9748176 chr17:79584043 TSPAN10 chr17:79609349-79615778:+ 0.63 6.69 1.53E-9 Eye color traits
THYM cis rs975752 1 rs975752 chr10:101906333 BLOC1S2 chr10:102033713-102046439:- -0.46 -4.99 2.74E-6 Schizophrenia
THYM cis rs2243480 1 rs9769882 chr7:65642925 CCT6P1 chr7:65216092-65228661:+ -0.67 -5.68 1.48E-7 Diabetic kidney disease
THYM cis rs4237643 1 rs9783304 chr11:43660255 HSD17B12 chr11:43702143-43878160:+ 0.57 5.83 7.53E-8 Forced vital capacity
THYM cis rs3820928 1 rs978909 chr2:227771389 RHBDD1 chr2:227700773-227861591:+ -0.31 -4.5 1.93E-5 Pulmonary function
THYM cis rs10935120 1 rs9809619 chr3:134280948 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs9809619 chr3:134280948 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height